FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005333945

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005333945
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6374935
Sequences flagged as poor quality0
Sequence length75
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGACG450.00462244830.6691134
CGCCGTA1851.8189894E-1124.24118246
GTCGCCG1752.419256E-1023.65457244
TCGCCGT2201.9099389E-1020.3846345
GCCGTAT2801.3236131E-613.55241847
GGAGCGT15450.012.7285718
AGCGTCT16350.012.23931610
GCGTCTC17050.011.73746711
CGATTCT13650.011.4471971
TCCGGGT5806.015398E-910.1110569
TCGTCTG9800.09.85522232
GTTCCGG5654.321373E-89.76877467
GCGAGCG3552.1967663E-49.71740821
CCGTATC4301.4545614E-59.62708848
CCGAGTA14050.09.32994822
CATCGTC9800.09.15127830
AGGAGCG27650.09.109517
GGTCGCC3804.3483192E-49.07796243
CGCGAGC3450.0018266188.99916420
TGGTCGC3956.400733E-48.73295542
Produced by FastQC (version 0.11.5)