FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005334033

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005334033
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6710597
Sequences flagged as poor quality0
Sequence length75
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA1206.390648E-520.12595246
TCGCCGT1901.2825768E-414.52700345
GTCGCCG1550.00811333213.3554744
AGCGTCG9505.966285E-107.989494369
TAGATCG8605.4116754E-87.622112369
CGTCGTG8401.2188174E-46.160730468
ATCGGAA23150.05.961138769
GCGTCGT7600.00153822745.90155167
CGTGTAG8000.0028352495.606264668
GTCGTGT9304.870695E-45.564530469
AGAGCGT14605.0068047E-75.43514867
GATCGGA24401.8189894E-125.37296568
AAGAGCG19351.4460966E-95.34885169
AGATCGG25300.05.318195369
CGGAAGA22852.5465852E-115.284477769
Produced by FastQC (version 0.11.5)