FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005334046

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005334046
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5513071
Sequences flagged as poor quality0
Sequence length75
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG1500.006532094413.80028246
TCGGAAG21001.8189894E-125.75147469
ACTGCGC11508.1746675E-65.699702731
ATCGGAA21453.6379788E-125.63081368
CGTGCCC9901.881805E-45.575466633
AGATCGG24100.05.441228469
GCGTGAG34050.05.369714722
ACCGCGC13001.1190916E-55.30741531
GATCGGA22155.638867E-115.296635667
CGTGAGC35450.05.254824623
ACACGTC8600.00662663165.216452668
ACAGGCG42400.05.125865518
CCGTGCC12401.621155E-45.007803432
CTGCGCC13107.1425726E-55.00355632
Produced by FastQC (version 0.11.5)