FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005334050

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005334050
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5707430
Sequences flagged as poor quality0
Sequence length75
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATGCCG2204.440283E-412.54564946
GATCGCG3752.1960477E-711.95892725
ATCGCGC3752.1960477E-711.95892726
TCGTATG3207.687344E-510.7808543
GGCGTAG3904.5479646E-610.61471220
GGGCGTA3602.1822754E-510.54099819
GCGTAGG3955.2957694E-610.48034921
ACGCATA2750.00287060410.03581661
ATGCCGT3854.5685236E-59.85686347
TCCGAGC3350.0013961049.26855732
CGTAGGA4855.983049E-69.24683722
GCCGTTT3500.0020768128.87296666
TCTCGTA3150.0087849048.76165741
CGTATGC3150.0087855348.761579544
GCGGGAT3800.0043787158.1707544
CGCGCCA5603.6590944E-58.00884228
AGATCGC9252.9922376E-97.831730424
CTTCTCG5402.0609595E-47.67673971
GGCGCTT5957.7809535E-57.53793249
TCAGCGA6958.712117E-67.4453764
Produced by FastQC (version 0.11.5)