FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005334051

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005334051
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5707430
Sequences flagged as poor quality0
Sequence length75
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTT750.00199455722.99886565
CGCCGTA1501.695531E-518.40038346
GTCGCCG1602.9531377E-517.25035944
TCGCCGT2057.765557E-716.82961845
GCCGTAT2500.001298022811.0402347
TGGTCGC3956.0518247E-59.6072942
CTTGCGG7851.07229425E-88.35005453
AGAGCGT23850.07.95572269
CTGCGCG3950.00620428667.860028338
GCTTGCG6705.183396E-67.723635752
GCGTCGT13900.07.694000769
AGCGTCG15700.07.251362369
TGCGGGC8301.9203999E-67.06672255
CCTTCGT6007.01406E-46.900022549
GGTTCGT7201.1075009E-46.70806110
CGATTCT11603.279638E-86.5453621
ATGCGCC5800.00372147446.54289615
CGTCGTG13402.040906E-96.43636369
CCGAGAT17800.06.395976521
GGGTTCG8158.046523E-56.3493819
Produced by FastQC (version 0.11.5)