FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005334060

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005334060
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5750146
Sequences flagged as poor quality0
Sequence length75
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATATGCG3500.00208053858.87121759
CGTAGGA6859.0132744E-88.56176522
TCGGAAG32600.08.46708764
TAGATCG10002.3646862E-118.28131569
GCGTAGG6756.581704E-78.17751221
ATCGGAA34600.07.877938763
CGGAAGA35450.07.68884565
GATCGGA35900.07.59266562
CGGGAAC8252.1850792E-77.52709429
CGATTCT13153.6379788E-127.35613161
GGGCGTA8453.261539E-77.348873619
AACCGGG10403.7325663E-97.297902633
CTTGCGG9951.2263627E-87.281170453
AGAGCAC41500.07.233678369
CTACTCG11606.148184E-107.13776133
AGGAGCG25800.06.68588737
GGAACCG10856.4303094E-86.677260431
GAACCGG10957.654671E-86.61628132
AGATCGG41750.06.61050661
TACTCGG12201.3076715E-86.503717434
Produced by FastQC (version 0.11.5)