FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005334085

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005334085
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5714041
Sequences flagged as poor quality0
Sequence length75
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTCTTA3200.0099948798.62451427
GCCGCAC3850.00491974468.0656861
AGATCGG10456.184564E-117.92362269
GGCGCGC4600.00287763687.499970429
TCGCATG5150.0086269126.69882723
TCGGAAG8852.486452E-45.847588568
AGAGCGT7700.001798585.824805769
ATCGGAA9304.8677225E-45.56473867
GATCGGA9556.958955E-45.418874366
Produced by FastQC (version 0.11.5)