FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005334180

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005334180
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5164640
Sequences flagged as poor quality0
Sequence length101
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA6050.011.35263394-95
AGATCGG7350.010.95583694-95
TAGATCG3356.0571983E-79.89776694-95
ATCGGAA8300.08.27511294-95
AAGTGCG2850.00967805557.47892234-35
ATAACGC4250.0073410326.129782712-13
CAGATCG4700.00311299376.046963792-93
TCGGAAG7851.162447E-66.034124494-95
Produced by FastQC (version 0.11.5)