FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005334199

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005334199
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4663375
Sequences flagged as poor quality0
Sequence length75
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGAGCG1800.001406530813.41441460
CGTAAGT2600.001797030410.61781627
TACGGAG3050.00673874149.049602553
TCGAATT3150.0087659188.76391127
TCGGAAG7856.372142E-67.030214369
GATCGGA8653.6871625E-66.778845367
AGATCGG8855.2661E-66.62586466
ATCGGAA9105.5938624E-56.06459168
Produced by FastQC (version 0.11.5)