FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005334228

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005334228
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4831619
Sequences flagged as poor quality0
Sequence length75
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGGGTA2600.001800732210.61520715
TAGATCG3157.9545594E-49.85616167
GACCGGG3000.00588999189.19908468
AGATCGG8452.5508798E-66.94013768
GATCGGA8502.7973638E-66.899455569
CGGAAGA8259.521898E-56.27223263
TCGGAAG7803.1316013E-46.191819762
ATCGGAA8800.00146155545.48814761
CTACTCG9850.00105243295.25388231
Produced by FastQC (version 0.11.5)