FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005334313

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005334313
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5374332
Sequences flagged as poor quality0
Sequence length75
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGAAAGT3200.0099773238.62635225
GGCGATG4100.0086506587.573441558
TCGGAAG8702.9001534E-56.344050465
AGATCGG9451.45598915E-56.205358569
GATCGGA9053.3763854E-45.71731969
ATCGGAA9300.00292871785.19291264
CGGAAGA9450.0035765275.110437466
Produced by FastQC (version 0.11.5)