FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005334347

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005334347
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5048140
Sequences flagged as poor quality0
Sequence length101
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGATCGG9650.09.60031994-95
GATCGGG4251.6834201E-78.94292294-95
GATCGGA8101.4551915E-117.623508592-93
CGGTCAA3250.00370268837.30911894-95
ATCGGAA8605.638867E-117.181633594-95
ATTCGCC3650.00144307297.15893194-95
CCCGTAA3600.009978526.5985194-95
CGTAACC4100.0048976736.373194794-95
GCCGCTT6103.7759775E-56.23072494-95
GCCCGAA5300.00179238415.82660894-95
CGTTTGG5100.007459175.589325494-95
TTCTCGG6708.949428E-45.31820194-95
TCGGAAA8951.1165006E-55.30829894-95
GTAGGCC10455.9648937E-65.000975694-95
Produced by FastQC (version 0.11.5)