FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005334408

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005334408
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6313628
Sequences flagged as poor quality0
Sequence length75
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGCCG800.002902224721.56075358
CGCCGGT1452.727028E-416.6534276
TATGCCG3701.3111276E-813.05392846
TGCCGTC4508.913048E-1113.03320748
TCGTATG3651.5435762E-712.28764843
GCGTAGG3853.897723E-610.75254621
CTCGTAT4501.989738E-710.73331442
CGTATGC4301.2855908E-610.43004944
ATGCCGT5151.2632336E-69.3785547
AGTTCCG5059.969102E-68.88166466
GAGCGTC13250.08.5913499
CGATTCT14500.08.105371
CGATCCT11103.6379788E-128.0967781
CGCCCAT11153.6379788E-128.04444626
GGGCGTA3900.0055327367.9610219
GGCGTAG4805.009197E-47.905734520
AGCGTCT14950.07.84514510
GCGTCTC14550.07.82373611
CGTCTTC6201.539211E-57.790061551
TGCGGGC7151.5711848E-67.7199652
Produced by FastQC (version 0.11.5)