FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005334410

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005334410
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6192851
Sequences flagged as poor quality0
Sequence length75
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAACGCG900.00573937519.16540761
CATCGTC9250.010.06993530
TCGTCTG9050.09.91127132
GCGTCTC13450.09.74625811
GAGCGTC13150.09.7062749
AGCGTCT13900.09.67890710
ATCGTCT10600.09.11290431
GGAGCGT14250.08.9570178
ATCGGAA17400.08.92283769
CCCATCG10900.08.861732528
ACCGACC3200.009996498.62436427
CGATTCT13650.08.354751
ACACGTC7151.7942148E-78.20318669
GATCGGA18950.08.19368
CCATCGT12400.07.789810729
CGCCCAT10354.2200554E-107.66610226
AGGAGCG23000.07.64931257
AGATCGG19700.07.530570567
CAATTCT46400.07.44790651
TAGATCG8001.0750973E-67.3314266
Produced by FastQC (version 0.11.5)