FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005334417

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005334417
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5150347
Sequences flagged as poor quality0
Sequence length75
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCCGTA953.0694506E-421.78755846
GCCGTAT2150.005325020811.2315747
CCGTATC2850.00385877449.68335848
CGTGATT5151.21027755E-48.03742538
ATCGGAA10653.2440767E-76.478051768
TCGGAAG10703.5299308E-76.44784369
GATCGGA10451.6075519E-66.271992767
AGATCGG11205.2358027E-65.85199366
CGGAAGA10705.68229E-45.158274769