FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344094

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344094
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2357940
Sequences flagged as poor quality0
Sequence length150
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCTTGC24350.032.736841
TCTGTCG10400.031.147798
CTATACG1203.6554167E-430.7539351
GTCTCGC12250.029.5237791
TCGCTCT12850.026.8897134
TATACTG7850.025.6765375
TTGCTCT34000.024.559934
GGGTTTC38950.024.4452321
GTGTTAC10900.024.3774321
GTTTCAC36550.024.028163
CTGTCGC14750.023.9139969
GCGTATA1550.001630232123.80951
GTATTAC6250.023.6190221
TCTCGCT14750.023.442362
GTGTAAC6450.022.886651
GTGTAAT10450.022.6019341
CTTGCTC34100.022.5879843
CTCGCTC14350.022.5740093
GGAGTGC58550.022.2535745
GAGTGCA62750.022.1407156
Produced by FastQC (version 0.11.5)