Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005344113 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2601678 |
Sequences flagged as poor quality | 0 |
Sequence length | 150 |
%GC | 49 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCTGTCG | 1040 | 0.0 | 38.0729 | 8 |
GTCTTGC | 2590 | 0.0 | 36.343323 | 1 |
CTGTCGC | 1335 | 0.0 | 33.973938 | 9 |
GTCTCGC | 1160 | 0.0 | 31.83415 | 1 |
GTCTACG | 150 | 4.4400353E-5 | 28.962831 | 1 |
GTGTTAG | 1770 | 0.0 | 27.408333 | 1 |
TCGCTCT | 1335 | 0.0 | 26.962925 | 4 |
GTACTAT | 590 | 0.0 | 25.772013 | 1 |
TTGCTCT | 3515 | 0.0 | 24.98692 | 4 |
CTTGCTC | 3360 | 0.0 | 24.67487 | 3 |
GTATAAT | 830 | 0.0 | 24.426485 | 1 |
GTCTCAC | 3120 | 0.0 | 23.903622 | 1 |
GGGTTTC | 4460 | 0.0 | 23.865114 | 1 |
TCTCGCT | 1410 | 0.0 | 23.519875 | 2 |
GTATTAG | 865 | 0.0 | 23.43813 | 1 |
GTATAGA | 850 | 0.0 | 22.999899 | 1 |
GTGTTAC | 1170 | 0.0 | 22.897966 | 1 |
GTTTCAC | 4005 | 0.0 | 22.681112 | 3 |
GTATAGT | 745 | 0.0 | 22.353867 | 1 |
CGCTCTG | 1450 | 0.0 | 22.342466 | 5 |