FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344151

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344151
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3752060
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG9000.024.1106248
ATCTCGT11500.022.82532370
GTCTCGC10150.021.0393871
CTGTCGC11550.019.9995969
GTCTTGC23500.019.96211
GGTATAC4500.018.6710171
TGTCGCC11250.018.66628810
TATACCG950.007204433418.4251025
TCGCTCT10650.018.40784
GTCGTAA1150.001007020118.2651271
GTATTAA5550.017.6617741
GCGTAGT2401.0286385E-817.5040781
GTACTAA5250.017.3373741
GTATAAA8900.016.9140551
GTATAAT5800.016.900491
TCTCGCT12850.016.6184372
GTCGCCC11750.016.08456811
GTATACG2201.3935023E-615.9127991
CGCTCTG11300.015.7999325
GTGTATA9750.015.7985541
Produced by FastQC (version 0.11.5)