FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344160

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344160
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3792814
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCGTAA1154.1152096E-521.309391
TCTGTCG9050.020.1099518
GTATTAT6200.019.1980921
GTCTTGC21400.018.9764521
GTCTCGC11600.018.7113231
TAATCCG1953.954592E-717.9491775
GTATAGA6350.017.6419681
GTGTTAC9950.017.240261
CTGTCGC10700.017.0088849
TAGTACT5200.016.8284634
TCGCTCT11450.016.8137664
GTGTAAG10850.016.1328491
TTAGTGT42600.015.93916570
GTGTTAG15200.015.4312821
GTGTAGG11800.015.1306981
TCTCGCT13750.015.020152
CGACGAA5600.015.00018670
GTCTAGC10300.014.9549931
CTCGCTC12700.014.8834493
GTAGATC14200.014.78891870
Produced by FastQC (version 0.11.5)