FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344168

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344168
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3556345
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG9000.027.6107658
GTCTCGC9650.024.6674161
CTGTCGC11000.021.6360959
TGTCGCC10950.021.41525810
TCGCTCT10550.020.90084
GTCTTGC20050.020.6020151
TCTCGCT10500.020.3350812
GTCGCCC11100.018.91868411
GTATTAA7800.018.8493651
TAATACG1301.05830135E-418.8464494
CGCTCTG11550.018.787915
GTATACG1702.1188662E-618.5325681
TCGCCCA12300.018.49570512
CTCGCTC11600.018.1044963
CGTGTAG21050.017.7907569
GTGTAAA12900.017.36731
TCCGTGT38800.016.86834770
GTATTAG6750.016.5954191
GTCTTAC9350.016.4733941
GCCGACC7050.016.38277470
Produced by FastQC (version 0.11.5)