FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344171

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344171
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3729732
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG10250.030.048148
GTATTCG1352.6011548E-1028.5228841
TGTCGCC12500.025.19946310
CTGTCGC12700.025.0782079
GTCTCGC12300.024.1906931
GTATTAG7550.024.1096521
TCGCTCT11350.022.5138554
GTATTAC5300.022.4562661
GTCGCCC12300.022.1946511
TCGCCCA12850.021.7894212
GTATAAT6350.021.4993531
GTCTTGC22150.020.8609811
TAATACT7050.020.8536974
CGAATCG850.00379250920.58807434
TCTCGCT13150.020.230962
GTATAGA5650.019.2064781
CTCGCTC13350.019.1409933
AATACCG1702.1198157E-618.531755
TATCTCG9900.018.38344870
GTATTAT6100.018.3634661
Produced by FastQC (version 0.11.5)