FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344172

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344172
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3729732
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG10500.028.0002758
GTCTCGC12850.025.0643221
TGTCGCC12300.025.04089510
CTGTCGC12500.024.0802359
TCGCTCT13600.023.9337374
TCTCGCT14650.022.2204342
CGAGTAT1755.2623363E-921.99991870
GTCTTGC23250.021.8331471
GTCTTAC8200.021.7734661
GTCGCCC12050.021.49398611
CTCGCTC15350.020.0653423
TCGCCCA13500.019.70389612
GTATAGA6800.019.0486451
CGCTCTG15900.018.4904985
GTGTAAC7000.018.0042781
GTCTCAC28950.017.1716121
GTACGGA1653.392069E-516.9737321
GTATAAA7750.016.713651
GTATTAC6350.016.5393641
TACACTG14650.016.2456745
Produced by FastQC (version 0.11.5)