FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344175

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344175
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3752726
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG9700.025.9794378
TGTCGCC11600.023.53421810
CTGTCGC12000.022.458389
TCGCTCT10200.021.9637574
GTCTCGC10300.021.7516771
TAGATCG1807.2850526E-921.38836370
GTCGCCC12150.021.31634711
GTATTAC5650.020.4463351
TAATACT7950.019.8140014
GTATTAT8200.018.784031
TCGCCCA14200.018.73193612
CGCTCTG11500.018.2633425
GTATAGG5200.018.1765061
TCTCGCT11400.017.8096642
GTGTAGT10300.017.6732371
GGTATAC5350.017.6668831
GTGTAAA13750.017.566951
GTCTTGC21000.017.5033021
CTCGCTC11400.017.5021343
GTCTCAC24600.017.0763911
Produced by FastQC (version 0.11.5)