FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344182

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344182
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3138708
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTCTCGC9600.028.8068831
TCTGTCG9500.028.0002028
GTCTTGC18900.027.0415421
TCGCTCT9500.026.5260874
TGTCGCC11600.025.6467410
GTCGCCC11050.025.02280811
CTGTCGC11400.024.2545629
AATACCG1052.042223E-523.333135
TCTCGCT11600.023.234042
TCGCCCA12150.023.04543512
GTATTAT5000.021.7036171
CTCGCTC11450.021.0921923
GTATTAG6900.019.7859041
CGCTCTG11000.019.4089245
TTGCTCT26350.019.2597964
ATCGTTC2607.2759576E-1118.8462910
GTCCGAT950.007206384618.4241221
TAATACG950.007213673618.4208954
CGAACGA950.007213673618.42089514
GTGTAAA11850.018.3152891
Produced by FastQC (version 0.11.5)