FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344187

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344187
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3867558
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG9650.027.9268178
TGTCGCC11350.021.58540510
GTCGCCC10900.021.19217111
CTGTCGC11800.021.0588369
TCGCTCT12350.020.1251544
GTCTTGC22800.019.807041
GTCTCGC11400.019.6534961
GCGAATG5700.019.0351470
TCGCCCA12950.017.83742512
GTATTAA7800.017.5038951
CGAATCG2401.0315489E-817.5000570
CTCGCTC13550.017.3094543
GTATTGG7950.017.1736341
TCTCGCT12900.017.0961652
GTATTAT8200.017.0769711
CGCTCTG13450.016.1367955
GTATAAG8050.016.0905381
GTATTCG1807.144251E-515.5590191
GTGTAGT11150.015.384591
ATCTCGT9900.015.20206270
Produced by FastQC (version 0.11.5)