FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344190

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344190
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3604570
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG9450.030.3711648
CTGTCGC11600.025.9489569
TGTCGCC11150.024.79885510
GTCTCGC10650.024.6519531
TCGCTCT10200.024.0199034
GTCGCCC10650.023.00529711
GTCTTGC23550.022.8912471
TCTCGCT11800.020.7649842
TCGCCCA12450.020.52262512
CTCGCTC11250.019.9119073
GTGTAAA11950.019.3337331
GTATAAG6750.019.1883491
CGCTCTG12250.018.8573745
TTGCTCT29600.018.3279294
GTGTAAG11400.018.1170221
GTATATA8100.017.718971
TAATACT7050.017.37614
TTACACT11700.017.3506414
GTGTTAC10350.017.2492221
GTGTAAC8400.017.0861511
Produced by FastQC (version 0.11.5)