FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344196

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344196
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4009494
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG11000.030.5451378
CTGTCGC14150.022.50869
GTCTTGC25200.022.3656221
TGTCGCC14800.021.52004610
GTCTCGC12450.021.369771
TCGCTCT12000.020.1247924
GTCGCCC14550.019.96518111
TCGCCCA15050.018.60422712
CGGTGTA28100.017.93598270
TTGCTCT31100.017.7811664
GTGTAAG13000.017.503531
ACGGTGT41400.017.24641270
TCTCGCT14500.016.8980642
GTGTTAC9000.016.7255951
CTCGCTC13650.016.6671183
CTTGCTC30950.016.5109483
GTATTAC5750.016.4380991
GTACTAG4750.016.2137951
TTATACT7800.016.1536794
CGCTCTG13800.015.9780955
Produced by FastQC (version 0.11.5)