FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344199

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344199
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3740357
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG10550.027.5348118
GTCTCGC12400.024.2793871
GGTATAC4100.023.0537091
CTGTCGC13550.022.730029
TGTCGCC13100.022.17497810
TTTACGC952.779258E-422.1096973
TCGCTCT13950.021.330444
GTCTTGC22900.021.0962141
GTCTTAC9450.020.374731
GTCGCCC13450.020.29685611
GTATTAA7000.020.0042781
GTGTAGA11150.019.4660471
TCTCGCT14600.019.4217012
GTATTAT6550.019.2407571
TACACCG2053.239984E-818.7842545
TCGCCCA14800.018.20897312
CTCGCTC15250.017.9052313
CGCTCTG16000.017.7223035
TAATACT6600.017.503514
TAATCCG1602.6054679E-517.503515
Produced by FastQC (version 0.11.5)