FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344229

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344229
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3695567
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTCGTA13300.027.89436170
GCTAATG18200.027.88423770
ATCTCGT22300.026.21040770
TCTGTCG11500.025.8699158
GTCGCCC11800.024.02477511
TGTCGCC13300.023.94672210
CTGTCGC13600.023.4191179
GTCTCGC10400.021.2070881
TCGCTCT11100.021.1318444
TATCGTA1356.0313196E-620.7404670
CTCGCTC11750.020.5587543
GTCTTGC23500.020.2602521
TCGCCCA14200.019.96424712
GTATTAG6650.019.4784281
GTATAAG7850.019.1766431
CTAATCG1501.4981109E-518.66641470
TCTCGCT12050.018.5939922
CGCTCTG12550.018.1323975
AATATCG3500.017.99975870
TTGCTCT29950.017.066394
Produced by FastQC (version 0.11.5)