FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344236

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344236
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3399638
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG9750.030.8740848
TGTCGCC11650.026.73978810
GTCTCGC10550.026.2189621
CTGTCGC12150.025.6397639
GTCTTGC19300.024.6730251
CGACGAA4950.024.0393670
TCGCTCT10800.023.9829084
GTAGATC14800.022.9381970
GTCGCCC11950.021.96783411
TCGCCCA13200.020.94821512
CTCGCTC12250.020.5771923
CGCTCTG12100.020.5375045
TCTCGCT12550.020.087082
TGTAGAT27100.020.0175870
GTATAGG4650.019.5776791
GTATTAG6550.019.2442971
GTATCGC1107.4612437E-419.0985071
GTGTTAG13400.018.8134541
GTATTGG5650.017.971751
GTGTAAC6850.017.8903271
Produced by FastQC (version 0.11.5)