FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344238

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344238
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3694143
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG11600.032.586168
CTGTCGC13450.028.624499
TGTCGCC13150.028.21288310
GTCTCGC11700.026.937621
GTCGCCC13250.026.67992611
CGACGAA5400.026.57259670
TCGCCCA14750.025.86541612
TCGCTCT13800.023.3329814
GTCTTGC21850.022.2774731
TCTCGCT13600.021.6272742
CTCGCTC13800.021.5640683
GCGTAGA1154.105557E-521.3158571
CGCTCTG13650.021.0253245
ATCGCAA5200.020.86422270
GTGTAAT9300.019.957011
GTAGATC15150.019.8668870
GGTATAC4700.019.372161
GTGTTAG16650.018.929141
GTATAGG5400.018.806451
GTATTAA6300.018.3432371
Produced by FastQC (version 0.11.5)