FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344244

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344244
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3654959
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG8800.028.637028
ACGATTA3750.027.99834470
GTAGATC17800.027.13322370
CGCCGTA1705.456968E-1226.7631268
TGTCGCC11250.024.88979710
GTCTCGC10600.024.1148831
CTGTCGC12150.023.3341859
TCGCTCT12000.022.7495864
CGAACGA800.002668742621.87430214
TGTAGAT33450.021.55328470
GTCGCCC11200.021.25106611
GTATTAA8300.020.6721741
TCGCCCA12600.020.55658712
CGCTCTG12850.019.610275
GCCGACC5200.019.51807670
TCGCCGT2353.8016879E-1019.36055667
GCCGTAT2353.8016879E-1019.36055669
GTCTTGC20000.019.2588711
CGTTTCG1301.058142E-418.8468449
TCTCGCT12700.018.7475132
Produced by FastQC (version 0.11.5)