FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344249

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344249
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3180883
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCGTA1800.027.22184670
TCTCGTA7250.025.58585270
ATCTCGT13150.024.22019470
TCTGTCG8400.022.9163488
TCGCTCT9850.022.7440174
TATCTCG17750.022.6757470
TAGTACG1154.118403E-521.3070644
TGTCGCC10900.021.19236610
GTCTCGC9600.021.1488651
CTGTCGC10700.020.607199
TCGCCCA11950.019.62315812
GTCGCCC10950.019.49744611
GTCTTGC18350.019.4578291
GTATTAT5950.019.4145451
GTGTAAA10850.019.3576131
TATATCG1107.481795E-419.09064570
CTCGCTC10900.018.3050863
TAATATG8850.018.19183770
TCTCGCT11350.017.5793362
TAATACT6650.016.8442544
Produced by FastQC (version 0.11.5)