FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344260

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344260
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3047220
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG8450.031.8938888
GTCTCGC9650.028.3049051
CTGTCGC9700.026.3405329
TGTCGCC10100.026.3369610
TCGCTCT10100.025.9908494
GTCGCCC9650.025.38891611
GTAGATC15050.023.72005770
GTCTTGC18300.023.5368561
TCTCGCT11050.022.815822
CTCGCTC11750.022.3473033
TCGCCCA11300.022.3011612
CGCTCTG11800.021.3561975
CCGACGC4250.020.58747770
GTATTAG5850.019.7538851
TACGCAA1257.831027E-519.60024310
TTGCTCT22900.018.952514
TGTAGAT26250.018.6659870
TAGACCG950.007212753418.421285
GTATTAC4600.018.2703911
AATACCG1150.001008453818.2610975
Produced by FastQC (version 0.11.5)