FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344262

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344262
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3861062
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG11500.028.6093888
CTGTCGC13800.023.3338999
TGTCGCC13700.023.24903910
GTCTCGC13600.023.1749321
GTCGCCC13100.022.71135711
GTAGATC14200.022.67484570
CGACGAA5150.022.42598570
TCGCTCT14050.022.1716444
TCGCCCA13300.021.58114812
ACGATAC2301.2732926E-1121.3032170
CGCTCTG13900.020.3961775
GTGTTAG14500.019.562841
GTCTTGC23700.019.0614641
CTCGCTC15600.018.4045563
TCTCGCT15450.018.1318722
GTATAAG7400.017.5099491
GTGTAAC6900.016.7486481
ACCGTGT6550.016.5652878
GTATAGT7000.016.509381
TGTAGAT25750.016.44572370
Produced by FastQC (version 0.11.5)