Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005344268 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3119420 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 49 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCTGTCG | 795 | 0.0 | 29.497107 | 8 |
TAATACG | 75 | 5.588941E-5 | 28.001585 | 4 |
GCCGACC | 515 | 0.0 | 25.144636 | 70 |
GTCTCGC | 895 | 0.0 | 25.037374 | 1 |
TCGCTCT | 910 | 0.0 | 25.001415 | 4 |
CTGTCGC | 1000 | 0.0 | 24.5006 | 9 |
TGTCGCC | 1015 | 0.0 | 24.483358 | 10 |
GTCTTGC | 1695 | 0.0 | 24.168407 | 1 |
GTCGCCC | 1000 | 0.0 | 23.450575 | 11 |
TCTCGCT | 935 | 0.0 | 22.842108 | 2 |
TCGCCCA | 1115 | 0.0 | 21.031906 | 12 |
GTAGATC | 1225 | 0.0 | 20.856318 | 70 |
CGCTCTG | 985 | 0.0 | 20.609974 | 5 |
CTCGCTC | 1025 | 0.0 | 20.150711 | 3 |
CGGTGTA | 3775 | 0.0 | 19.65485 | 70 |
GGACCGT | 145 | 1.1179378E-5 | 19.310818 | 6 |
GTATAAT | 600 | 0.0 | 19.257263 | 1 |
GTATAGG | 440 | 0.0 | 19.098112 | 1 |
GTGTAAT | 685 | 0.0 | 18.912243 | 1 |
TGTAGAT | 2340 | 0.0 | 18.845407 | 70 |