FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344268

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344268
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3119420
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG7950.029.4971078
TAATACG755.588941E-528.0015854
GCCGACC5150.025.14463670
GTCTCGC8950.025.0373741
TCGCTCT9100.025.0014154
CTGTCGC10000.024.50069
TGTCGCC10150.024.48335810
GTCTTGC16950.024.1684071
GTCGCCC10000.023.45057511
TCTCGCT9350.022.8421082
TCGCCCA11150.021.03190612
GTAGATC12250.020.85631870
CGCTCTG9850.020.6099745
CTCGCTC10250.020.1507113
CGGTGTA37750.019.6548570
GGACCGT1451.1179378E-519.3108186
GTATAAT6000.019.2572631
GTATAGG4400.019.0981121
GTGTAAT6850.018.9122431
TGTAGAT23400.018.84540770