FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344273

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344273
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2765971
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTATGCG601.2173148E-534.999379
TCTCGTA7700.026.81769670
TATCGTA808.676068E-526.24952570
ATCTCGT13650.025.64056270
GCGTTAA1052.0394045E-523.337131
CTGTCGC8650.021.0400839
TGTCGCC8200.020.48743410
TCTGTCG7700.020.4541748
GTCGCCC7950.020.25193811
TATCTCG17300.020.0285469
ATATCGT1408.259434E-619.9996469
TCGCCCA8600.019.12825212
GTATAGA5500.019.0940171
GTACGGA1351.4115921E-418.15111
TACCCCG1752.7952065E-618.0026045
GTCTTGC15650.017.8942851
ATTATCG2005.149177E-717.502533
GTATAAG5650.017.3479561
CCACGAC5500.017.18150970
TCGCTCT10050.017.0671444
Produced by FastQC (version 0.11.5)