FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344276

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344276
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4001170
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG10650.026.9494348
GTAGATC17700.025.90240370
CTGTCGC12950.022.433339
TGTCGCC12750.021.68714110
GTCTCGC12100.020.2578581
GTCTTGC22000.020.0552791
TGTAGAT32250.019.96779470
TCGCCCA14400.019.932112
TCGCTCT12350.019.8386024
GTCGCCC12900.019.26505911
GTACTAT6100.018.9437071
GTACTAG4400.018.3044221
TCTCGCT13800.018.2686792
CGCTCTG13800.018.2606875
GTGTAAC7200.017.9949261
GTATAAC5200.017.5085771
GTATAAG7650.016.9364011
GTGTAGA40900.016.51490270
CTCGCTC14000.016.2557283
GGGTAAT8200.016.2274631
Produced by FastQC (version 0.11.5)