FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344285

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344285
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3606831
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG9850.027.7153368
ATCTCGT15800.027.02492770
TCTCGTA8200.026.88985670
CTGTCGC11750.023.8294439
TATCTCG22800.023.48650470
GTCTCGC11350.022.8225351
TCGCTCT12200.022.6670634
TGTCGCC12050.022.36482210
GTCTTGC19700.021.322741
GTCGCCC10750.020.83719811
TTATATG11600.020.21522570
GTATTAA7550.019.9365271
CTCGCTC13000.019.6565593
GGTTACG950.00720777718.4235972
TCGCCCA12750.018.39214512
GTACTAG5200.018.1755851
TCTCGCT13550.018.0836772
CGCTCTG13800.017.7560755
GTATAGT7200.017.5024171
GTATAGG5400.017.5024151
Produced by FastQC (version 0.11.5)