FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344294

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344294
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3442585
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGATCGG350.001256341839.99854715
TCTGTCG8400.026.2509548
TGTCGCC8500.024.70749710
GTCGCCC7850.023.18622811
CTGTCGC9750.022.9755279
GTCTTGC21050.021.1266691
GGCGTAC1003.922918E-421.0102231
GTATAGA7100.020.7143061
TCGCCCA9150.020.6570912
TCGCTCT10600.020.472444
GTCTCGC9700.019.8550221
GTATTAG8000.019.259371
CGCCGTA2203.5124685E-919.0896668
GCCGACC4100.018.7792670
GTATAAG4900.018.5804711
CGCTCTG11450.018.0348035
TCTCGCT11500.017.050292
CTCGCTC11500.017.0483073
GTGTAAT8550.016.7917961
TTGCTCT27750.016.6492524
Produced by FastQC (version 0.11.5)