FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344296

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344296
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3388367
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATCG652.1044008E-532.30953610
GTATCGA1001.26110535E-831.50179911
GTAGATC20750.031.03425470
TCTGTCG9700.023.4549488
TGTAGAT37550.023.39404770
TGTCGCC9550.023.09032410
GTCTCGC10900.022.1660611
GCCGACC4100.021.34016270
ATACCCG1205.7213383E-520.416934
CTGTCGC11450.020.1758259
GTCGCCC9750.019.74471911
TCGCCCA10650.019.39049312
TCTCGCT12750.019.2238772
GTGTAGA50600.018.81308470
GTCTTGC18800.018.6255071
TAACGGT950.007212895418.421294
TCGCTCT12150.018.148384
CTCGCTC12750.017.5732613
GTATAGA5400.017.5079771
TACCCGT1250.001763572716.7999695
Produced by FastQC (version 0.11.5)