FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344298

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344298
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3639105
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGATTTA2850.030.70179270
TCTGTCG9200.028.1525948
CTGTCGC11200.024.6875299
TGTCGCC11600.023.23278610
GTCTTGC23050.022.9429451
GTCTCGC10600.021.8062611
TAATACT6800.021.1049964
GTCGCCC11300.020.44250311
CGCCGTA2252.1282176E-1020.22252567
TCGCTCT11500.019.4801584
CGTGTTA4250.018.94119810
TCGCCCA13000.018.84591712
TCTCGCT12250.018.580132
GTGTACG1752.782681E-618.0114061
CTCGCTC11800.017.8022583
GTAGATC17750.017.35213370
GTGTTAG17100.016.999071
GCCGACC4950.016.96971770
TCGAACG1250.001764219416.79909513
GTGTTAC9000.016.3436831
Produced by FastQC (version 0.11.5)