FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344347

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344347
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3494248
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG9650.025.025418
TACACCG1401.1912562E-825.003085
GTCTTGC21500.022.9586181
CTGTCGC11150.021.6587649
GTATTAG7900.021.2705751
GTCTCGC11200.020.629611
TCGCTCT11150.020.0921634
GTATTAT4950.019.8024041
GTGTATA8650.019.4263061
GTGTTAG15050.019.306641
TGTCGCC12000.019.24961910
GTCGCCC10550.018.90957611
GTATCGG1150.001007066118.2649521
GTATAAT5400.018.1522051
GTATAGA5800.018.1074941
GTATAAG5450.017.985671
GTATTGG6350.017.6417371
TATACCG1000.00968733417.5021575
CGCTCTG12900.017.095135
GTGTAAA12100.016.780611
Produced by FastQC (version 0.11.5)