FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344352

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344352
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4258230
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG11500.030.7389288
CGGTCGA500.00721234228.0001459
CTGTCGC13800.026.8841979
TGTCGCC14150.026.71391910
GTCGCCC13400.024.81385211
GTCTCGC13950.024.356781
TCGCTCT14850.021.9182764
GTCTTGC25800.021.3158321
TCGCCCA16050.021.15300612
CGTGTTA5800.020.5173510
GTATTAT8500.020.1929381
CGCTCTG16100.019.565095
TCTCGCT16550.019.2491072
GGTATAC5850.017.9633661
GTATAGA8200.017.941461
TACACTG16400.017.7132995
GTGTAAC8950.017.6121251
CGTTTCG2005.160873E-717.4992727
CTCGCTC17650.017.4503123
TTATACT7050.017.375164
Produced by FastQC (version 0.11.5)