FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344354

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344354
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4266084
Sequences flagged as poor quality0
Sequence length76
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG11150.027.6238048
CTGTCGC12450.025.8645139
TGTCGCC12900.025.23418610
GTCTCGC11300.024.1795561
GTCGCCC12050.023.23801411
GTCTTGC26850.021.0045681
CGTTTCG1356.028831E-620.7415929
TCGCTCT12950.020.270394
TCGCCCA13850.020.21790912
GTATTAT9200.020.1799561
CGCTCTG13750.018.3273815
GTATAGA7850.018.295591
TAATACT7550.018.0795764
GTATATA9050.017.8049771
GTGTAAC7750.017.6276761
TCTCGCT14700.017.6232812
CTCGCTC15300.017.3853173
GTGTTAC11950.016.4154321
GTGTAAA16650.016.410151
GTCTTAC12400.016.38471
Produced by FastQC (version 0.11.5)