FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344357

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344357
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4244936
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG12300.025.0398648
GTCTCGC13600.024.9703921
CTGTCGC13150.024.7520739
GTCGCCC12550.023.42555811
TCGCTCT14550.023.3375474
TGTCGCC13750.023.16290910
CGAACGA800.00266844121.87482614
GTCTTGC27000.021.1356871
CGCTCTG15550.020.7111365
GTATTAG7850.020.5154321
TCTCGCT16650.019.9738122
GTATAAG8800.019.4942251
TCGCCCA14950.019.1967212
GGTATAC6450.018.9976921
GTATAGA7100.018.7377641
CTCGCTC16500.018.4578783
GTCTTAC10650.018.4090331
GTATTAT6650.017.8998661
GTATAAT6700.017.7662871
GTGTAAA14750.017.5643561
Produced by FastQC (version 0.11.5)