FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344360

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344360
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3902390
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG10800.029.1667258
CTGTCGC12400.026.2507259
TGTCGCC12550.025.65840710
GTATTAC4900.025.0228161
GTCTCGC13100.024.6025851
TCGCTCT13750.024.1812484
GTCGCCC12000.022.16784711
GTCTTGC26350.021.6706121
CGTGTTA5500.021.6372410
CGCTCTG14550.020.927345
TCTCGCT15100.020.8663162
TCGCCCA13450.020.55897912
CTCGCTC15750.020.2222633
GTGTTAG18950.019.5957031
GTGTATA12900.018.7380141
TTCACCG7300.018.6981895
GGTATAC4100.017.943191
CGCCGTA2155.6021236E-817.90701367
GTGTAAC8100.017.7322181
GGGTTTC42250.017.5781571
Produced by FastQC (version 0.11.5)