FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344361

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344361
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3725823
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG9900.028.2822488
GTCTCGC12300.023.9077241
CTGTCGC11750.023.8292989
TCGCTCT12600.023.6141134
TGTCGCC12100.021.98301910
GTATTAC5400.021.393621
GTATTAG7750.020.7787861
GTCGCCC11500.020.69522911
GTATTAT7400.019.8692571
GTCTTGC26100.019.7170031
CGCTCTG14400.019.6900025
GTATTGG8750.019.6043341
TAATACT7150.019.5829094
GTACTAC4600.019.0259461
GTGTAGA11800.018.9872471
GTGTAAC7200.018.9625261
CTCGCTC13850.018.9554773
GTACCGA1301.0566527E-418.850321
TCTCGCT14950.018.4973352
GTATAAT5200.018.1770951
Produced by FastQC (version 0.11.5)