FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344363

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344363
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3582157
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATTAC4400.025.4619241
GTCTCGC11200.024.6946541
TCGCTCT12900.023.0651574
TGTCGCC12450.023.0518110
TCTGTCG11750.022.3397278
CTGTCGC13500.022.0366549
GTATTAG7800.021.5447031
TCTCGCT12900.021.4376282
CTCGCTC13100.021.1097453
GTATAAT5500.021.0060861
GTCGCCC12500.020.1596511
GTCTTGC24850.020.146681
CGTGTTA4350.020.11459410
TAGTACT5050.020.101754
CGCTCTG13250.019.5498335
GTATAAA7650.019.2212561
GTATTAT5700.019.0406061
GTATACG1351.4103658E-418.1534081
GTACTAC3950.017.7266561
GTCTTAC9350.017.5986821
Produced by FastQC (version 0.11.5)