FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005344370

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005344370
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3408140
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGTCG8100.029.8140038
GTCTCGC9450.023.3559991
GTGTACG2450.022.8793471
GTACGGA1253.0690117E-622.4217591
GTCTTGC21650.022.331141
CTGTCGC10700.022.2423849
TCGCTCT10250.022.1938674
CGTGTTA4450.022.0228410
TGTCGCC11050.021.53882210
GTCGCCC10500.021.3336911
TCGCCCA11550.020.60640712
GTATTAT5600.020.0194281
GGTATAC4550.020.0194261
GTATAGG4850.018.781111
GTATTAC3400.018.5474111
GAATACG1702.1026572E-618.5474111
GTACTAT4000.018.3928491
GTATTAA5400.018.165781
TCTCGCT11600.018.1080022
CGTTTCG1200.001342046717.4995239
Produced by FastQC (version 0.11.5)